SOFTWARE
Our group uses the statistical package R for a lot of our programs. For a some hints on R please click here:
Significance Testing
Weighted False Discovery Rate (Latest Update: 3/15/2006)
Grouped False Discovery Rate (Latest Update: 10/18/2007)
Linkage Software
Population specific allele frequency estimates
Preclustering / CovIBD Linkage Tools
Bayes allele frequency software
Genehunter result combination software
Robust estimation of critical values for genome scans to detect linkage
Association Software
Excess Allele Matching/Sharing in Extended Pedigrees, MHC
Principal Component of Heritability, PCHAT (v2.2 updated 6/10/08)
Genetic Matching by ancestry, GEM
Program to create the MMprime matrix to use in GEM
Single Locus Tests for Association
Evolutionary Tree-Transmission Disequilibrium Test
Frequentist Genomic Control Software
Bayesian Genomic Control Software
Descriptive Tools for SNPs and Haplotypes
Tag SNP Selection using
H-Clust
(Much Faster, Latest Update : 02/28/2008)
Warning: File format and usage
commands have changed from the older versions.
Haplotype Blocks using Entropy Blocker
Linkage Data Analysis
Linkage analysis of families containing individuals with Anorexia Nervosa.
Linkage analysis of families containing individuals with Bulimia Nervosa.