-------------------------------------------------------------------------- Association Studies for Quantitative Traits in Structured Populations: Models and Summary Statistics Date: Wed Apr 18 14:41:03 2007 -------------------------------------------------------------------------- -------------------------------------------------------------------------- Program: GC Response Type (Y): Gaussian Covariates: Yes Number of loci in data file: 100 Number of subjects: 100 Null Loci: 70-100 Estimate(s) of lambda: Marginal: 1.04931 Alpha: 0.1 Bonferroni p-value cutoff: 0.0167 FDR p-value cutoff: 0.0815 -------------------------------------------------------------------------- ---------- Model 1 ---------- Model: Y = X1 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X1 -0.685 0.4932 ind -0.233 0.8154 ---------- Model 2 ---------- Model: Y = X2 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X2 -2.073 0.0382 Yes ind -0.073 0.9420 ---------- Model 3 ---------- Model: Y = X3 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X3 0.719 0.4724 ind -0.194 0.8461 ---------- Model 4 ---------- Model: Y = X21 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X21 1.842 0.0655 Yes ind -0.002 0.9983 ---------- Model 5 ---------- Model: Y = X22 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X22 -0.135 0.8928 ind -0.067 0.9467 ---------- Model 6 ---------- Model: Y = X25 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X25 -1.742 0.0815 Yes ind -0.472 0.6367 ------------------ SNP effects Table ------------------ Standard Bonferroni FDR SNP Effect Error p-value cut-off cut-off ------------------------------------------------------------------------------------- X1 -0.807 1.1496 0.4932 X2 -2.3213 1.09307 0.03816 Yes X3 0.8087 1.09862 0.4724 X21 2.08463 1.1048 0.06546 Yes X22 -0.1437 1.04121 0.8928 X25 -1.93 1.08154 0.0815 Yes -------------------------------------- Summary Statistics: Response Variable -------------------------------------- Mean: 48.843 SD: 8.731 Min: 24.090 Q1: 43.742 Med: 48.250 Q3: 55.612 Max: 72.080 -------------------------------------- Summary Statistics: Loci -------------------------------------- Loci 11 12 22 Missing -------------------------------------------------- X1 33 33 27 7 X2 29 33 35 3 X3 30 30 35 5 X4 30 35 29 6 X5 35 39 24 2 X6 36 37 24 3 X7 31 33 35 1 X8 29 38 29 4 X9 35 32 30 3 X10 25 26 41 8 X11 34 28 30 8 X12 30 37 30 3 X13 31 33 32 4 X14 27 36 35 2 X15 32 30 35 3 X16 25 33 38 4 X17 35 37 23 5 X18 32 38 23 7 X19 34 32 27 7 X20 36 27 29 8 X21 23 32 41 4 X22 36 28 35 1 X23 34 36 25 5 X24 31 33 32 4 X25 32 29 34 5 X26 37 34 22 7 X27 34 34 26 6 X28 26 38 31 5 X29 35 38 23 4 X30 37 27 30 6 X31 35 33 27 5 X32 21 35 39 5 X33 33 46 17 4 X34 37 31 29 3 X35 30 29 41 0 X36 26 36 32 6 X37 36 25 33 6 X38 26 37 35 2 X39 33 34 30 3 X40 31 39 26 4 X41 38 31 30 1 X42 25 51 20 4 X43 30 37 28 5 X44 19 38 40 3 X45 32 33 33 2 X46 24 40 33 3 X47 32 34 31 3 X48 29 39 28 4 X49 28 36 35 1 X50 32 32 33 3 X51 26 34 30 10 X52 28 39 29 4 X53 34 29 31 6 X54 33 33 31 3 X55 36 33 28 3 X56 36 26 32 6 X57 33 38 28 1 X58 41 24 31 4 X59 35 34 30 1 X60 36 33 26 5 X61 38 29 30 3 X62 33 32 30 5 X63 30 37 27 6 X64 34 35 27 4 X65 42 31 24 3 X66 34 32 32 2 X67 35 26 34 5 X68 32 35 31 2 X69 32 28 36 4 X70 30 37 31 2 X71 27 30 32 11 X72 28 39 33 0 X73 32 24 40 4 X74 36 27 35 2 X75 39 30 28 3 X76 34 36 27 3 X77 26 35 37 2 X78 33 34 29 4 X79 37 30 29 4 X80 29 32 35 4 X81 32 39 27 2 X82 43 24 26 7 X83 37 30 29 4 X84 26 36 36 2 X85 26 43 29 2 X86 32 36 28 4 X87 31 33 33 3 X88 31 32 30 7 X89 33 35 26 6 X90 32 38 28 2 X91 40 30 30 0 X92 28 39 31 2 X93 29 34 35 2 X94 30 29 39 2 X95 29 32 32 7 X96 30 32 34 4 X97 24 33 41 2 X98 32 33 26 9 X99 27 37 26 10 X100 33 34 31 2 -------------------------------------- Summary Statistics: Covariates -------------------------------------- ind --------------- Mean: 0.550 SD: 0.500 Min: 0.000 Q1: 0.000 Med: 1.000 Q3: 1.000 Max: 1.000