-------------------------------------------------------------------------- Association Studies for Quantitative Traits in Structured Populations: Models and Summary Statistics Date: Wed Apr 18 14:37:50 2007 -------------------------------------------------------------------------- -------------------------------------------------------------------------- Program: GC Response Type (Y): Binomial Covariates: Yes Number of loci in data file: 50 Number of subjects: 100 Null Loci: 6-50 Estimate(s) of lambda: Marginal: 1.96233 Interaction: 1 Omnibus: 1.27477 Alpha: 0.05 Bonferroni p-value cutoff: 0.0250 FDR p-value cutoff: 0.0000 -------------------------------------------------------------------------- ---------- Model 1 ---------- Model: Y = X1 + X2 + X1*X2 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X1 -2.573 0.0101 X2 -1.160 0.2460 X1*X2 -0.028 0.9776 omnibus 13.245 0.0000 Yes Yes bp -0.302 0.7626 prev -0.020 0.9840 ---------- Model 2 ---------- Model: Y = X3 + X5 + X3*X5 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X3 -0.520 0.6027 X5 0.529 0.5966 X3*X5 -0.598 0.5497 omnibus 0.340 0.8492 bp -0.608 0.5434 prev -0.427 0.6693 -------------------------------------- Summary Statistics: Response Variable -------------------------------------- Level : Count ------------- 0 : 50 1 : 50 -------------------------------------- Summary Statistics: Loci -------------------------------------- Loci 11 12 22 Missing -------------------------------------------------- X1 12 31 57 0 X2 7 28 65 0 X3 0 5 95 0 X4 6 39 55 0 X5 1 30 69 0 X6 14 44 42 0 X7 5 37 58 0 X8 2 28 70 0 X9 0 11 89 0 X10 25 35 40 0 X11 4 36 60 0 X12 7 32 61 0 X13 29 43 28 0 X14 24 46 30 0 X15 23 48 29 0 X16 18 44 38 0 X17 2 16 82 0 X18 9 21 70 0 X19 10 45 45 0 X20 6 38 56 0 X21 22 49 29 0 X22 1 25 74 0 X23 0 15 85 0 X24 13 36 51 0 X25 3 35 62 0 X26 15 50 35 0 X27 19 53 28 0 X28 17 49 34 0 X29 4 36 60 0 X30 25 47 28 0 X31 13 42 45 0 X32 5 29 66 0 X33 16 49 35 0 X34 12 39 49 0 X35 6 31 63 0 X36 25 41 34 0 X37 19 47 34 0 X38 17 39 44 0 X39 5 30 65 0 X40 19 40 41 0 X41 8 41 51 0 X42 14 48 38 0 X43 1 25 74 0 X44 25 47 28 0 X45 0 31 69 0 X46 0 20 80 0 X47 20 48 32 0 X48 14 35 51 0 X49 26 45 29 0 X50 2 25 73 0 -------------------------------------- Summary Statistics: Covariates -------------------------------------- bp --------------- Mean: 98.980 SD: 8.473 Min: 80.000 Q1: 94.000 Med: 98.000 Q3: 106.000 Max: 118.000 prev --------------- Mean: 0.480 SD: 0.502 Min: 0.000 Q1: 0.000 Med: 0.000 Q3: 1.000 Max: 1.000