-------------------------------------------------------------------------- Association Studies for Quantitative Traits in Structured Populations: Models and Summary Statistics Date: Wed Apr 18 14:37:41 2007 -------------------------------------------------------------------------- -------------------------------------------------------------------------- Program: GC Response Type (Y): Binomial Covariates: Yes Number of loci in data file: 100 Number of subjects: 100 Null Loci: 1-100 Estimate(s) of lambda: Marginal: 1.34969 Alpha: 0.05 Bonferroni p-value cutoff: 0.0050 FDR p-value cutoff: 0.0031 -------------------------------------------------------------------------- ---------- Model 1 ---------- Model: Y = X1 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X1 -2.959 0.0031 Yes Yes bp 1.138 0.2551 prev -1.296 0.1951 ---------- Model 2 ---------- Model: Y = X2 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X2 -3.211 0.0013 Yes Yes bp 0.895 0.3710 prev -0.634 0.5260 ---------- Model 3 ---------- Model: Y = X3 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X3 -0.900 0.3683 bp 0.528 0.5972 prev -0.719 0.4723 ---------- Model 4 ---------- Model: Y = X4 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X4 1.782 0.0748 bp 0.868 0.3852 prev -0.914 0.3606 ---------- Model 5 ---------- Model: Y = X5 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X5 -1.201 0.2297 bp 0.730 0.4654 prev -0.788 0.4305 ---------- Model 6 ---------- Model: Y = X6 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X6 0.232 0.8163 bp 0.569 0.5692 prev -0.745 0.4562 ---------- Model 7 ---------- Model: Y = X7 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X7 0.989 0.3229 bp 0.566 0.5712 prev -0.667 0.5048 ---------- Model 8 ---------- Model: Y = X8 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X8 -0.068 0.9454 bp 0.585 0.5586 prev -0.751 0.4528 ---------- Model 9 ---------- Model: Y = X9 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X9 1.272 0.2035 bp 0.602 0.5470 prev -0.847 0.3968 ---------- Model 10 ---------- Model: Y = X10 Test Bonferroni FDR Term statistic p-value cutoff cutoff -------------------------------------------------------------------------- X10 0.394 0.6938 bp 0.603 0.5467 prev -0.716 0.4738 ------------------ SNP effects Table ------------------ Standard Bonferroni FDR SNP Effect Error p-value cut-off cut-off ------------------------------------------------------------------------------------- X1 -1.3945 0.4057 0.003087 Yes Yes X2 -1.3108 0.3513 0.001321 Yes Yes X3 -0.2957 0.2829 0.3683 X4 0.6597 0.3187 0.07478 X5 -1.02376 0.7337 0.2297 X6 0.08839 0.3274 0.8163 X7 0.4134 0.36 0.3229 X8 -0.02657 0.3339 0.9454 X9 0.4319 0.2923 0.2035 X10 0.1522 0.3327 0.6938 -------------------------------------- Summary Statistics: Response Variable -------------------------------------- Level : Count ------------- 0 : 50 1 : 50 -------------------------------------- Summary Statistics: Loci -------------------------------------- Loci 11 12 22 Missing -------------------------------------------------- X1 11 22 67 0 X2 14 27 59 0 X3 24 48 28 0 X4 11 37 52 0 X5 0 10 90 0 X6 7 46 47 0 X7 4 35 61 0 X8 6 38 56 0 X9 37 46 17 0 X10 6 37 57 0 X11 1 14 85 0 X12 7 38 55 0 X13 22 52 26 0 X14 6 50 44 0 X15 15 44 41 0 X16 18 58 24 0 X17 55 32 13 0 X18 6 15 79 0 X19 11 46 43 0 X20 22 45 33 0 X21 15 48 37 0 X22 21 43 36 0 X23 9 43 48 0 X24 19 44 37 0 X25 7 40 53 0 X26 4 27 69 0 X27 3 34 63 0 X28 1 15 84 0 X29 21 60 19 0 X30 6 27 67 0 X31 23 52 25 0 X32 16 48 36 0 X33 3 27 70 0 X34 27 52 21 0 X35 5 19 76 0 X36 20 51 29 0 X37 17 43 40 0 X38 7 43 50 0 X39 4 25 71 0 X40 1 32 67 0 X41 13 47 40 0 X42 21 50 29 0 X43 18 51 31 0 X44 18 44 38 0 X45 8 34 58 0 X46 10 52 38 0 X47 2 34 64 0 X48 2 15 83 0 X49 2 33 65 0 X50 17 49 34 0 X51 6 56 38 0 X52 5 37 58 0 X53 24 58 18 0 X54 19 41 40 0 X55 7 40 53 0 X56 16 39 45 0 X57 12 45 43 0 X58 6 34 60 0 X59 1 20 79 0 X60 6 42 52 0 X61 0 12 88 0 X62 14 40 46 0 X63 4 34 62 0 X64 0 14 86 0 X65 5 48 47 0 X66 0 6 94 0 X67 4 46 50 0 X68 0 7 93 0 X69 5 27 68 0 X70 12 43 45 0 X71 4 29 67 0 X72 16 48 36 0 X73 23 54 23 0 X74 15 47 38 0 X75 9 40 51 0 X76 14 51 35 0 X77 1 16 83 0 X78 11 40 49 0 X79 1 38 61 0 X80 29 42 29 0 X81 29 45 26 0 X82 3 30 67 0 X83 9 57 34 0 X84 23 44 33 0 X85 2 26 72 0 X86 4 42 54 0 X87 5 40 55 0 X88 22 48 30 0 X89 15 35 50 0 X90 12 31 57 0 X91 1 28 71 0 X92 18 47 35 0 X93 30 45 25 0 X94 12 30 58 0 X95 19 42 39 0 X96 8 40 52 0 X97 6 41 53 0 X98 25 50 25 0 X99 7 40 53 0 X100 5 23 72 0 -------------------------------------- Summary Statistics: Covariates -------------------------------------- bp --------------- Mean: 98.980 SD: 8.473 Min: 80.000 Q1: 94.000 Med: 98.000 Q3: 106.000 Max: 118.000 prev --------------- Mean: 0.480 SD: 0.502 Min: 0.000 Q1: 0.000 Med: 0.000 Q3: 1.000 Max: 1.000